SE3130019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10616
  • Fragaria vesca
  • SE3130019
  • hAT
  • Frvh3
  • LG7:6880291-6880625
  • TATACTCN
  • GTCAGTGGCGTAGCCAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCGCTGTC                G AAAATAAAC       GT AAAATTTAGTGTTTCCTACATCGTCTACATTTGAGTAGCTTGTATCACTCAACCCTTACCAACTTGAATAAAAAATATATAAAATATCCATGATGATCATATTTTGAGTCTTTTTTTTTCAGATTGTA
                         GTCAGTGGCGTAGCCA A         TAGGAGG  C                                                                                                                                
                         |||||||||||||||| |         |||||||  |                                                                                                                                 
                         CGGTCACCGCATCGGT T         TCACTCT  C                                                                                                                                
                   TGCTGT                G -----ACTC       -- CCAAGTTTACTGGAGAGAGTGAAAAGGTATGTTGGATACTATCCAACTATGTTAGTGGTAAAAGTAAGAATATAATATATTAATCATATTTCAAACTGCAAATCTGATCAATTATAATGTACGATGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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