SE3120022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10619
  • Fragaria vesca
  • SE3120022
  • Mutator
  • FrvM12
  • LG5:3735771-3736196
  • TATATACAT
  • CATGAGGGGTAAGGCTAGGATGTGTTAATGCATGTGATGCATCAATTTTGTCTTCAAGTTGTAAAATAAGTCCTCAAAGTAGTAATATTAGTCTTTAAAGTTGTAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATATA    -AG   T  GG   G                   ---------            ---------           -    A  A      CA    A       T                   AAAAT  T              C    T               -TAT  A  CCTA     T     A        -----------     TT  AA
      CATG   GGG AA  CTA GATGTGTTAATGCATGTGA         TGCATCAATTTT         GTCTTCAAGTT GTAA AT AGTCCT  AAGT GTAATAT AGTCTTTAAAGTTGTAAAA     TA TTACAACATTAGTC TCAT TGTTTTTAAAGTGGT    TG GT    AAAGT GTAAT TGAGTCCT           GAAAA  GT  
      ||||   ||| ||  ||| |||||||||||||||||||         ||||||||||||         ||||||||||| |||| || ||||||  |||| ||||||| |||||||||||||||||||     || |||||||||||||| |||| |||||||||||||||    || ||    ||||| ||||| ||||||||           |||||  ||   
      GTAC   CCT TT  GAT TTACACAATTACGTACACT         ACGTAGTTGAAA         CAGGAGTTTGA CATT TA TCAGGA  TTCA CATTATG TCAGGAATTTCAACATTTT     AT AATGTTGTAATCAG AGTA ACAGGAATTTCACCA    AC CA    TTTCA CATTA ACTCAGGA           TTTTT  CA  
    GA    ATA   T  AA   G                   TACTACACT            CATTTAACT           T    A  A      AC    A       C                   AAAAT  C              T    C               TTTT  A  TAAA     C     -        ATTTCACTAAT     TT  AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End