SE3150024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10621
  • Fragaria vesca
  • SE3150024
  • PIF/harbinger
  • FrvP4
  • LG5:19474681-19475151
  • TAT
  • GGCCTCGTTTGGTTCACGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCCAA              CAC   -TT    AGGTTGGGAAGGAAAAGTTGTTCATTTTTTTTGTTTGGCACACCTATGGAAATAAAAGACTTTACTGCAATATGAGAAAATAGATGGGAAATTGAATCTTTCCACATACCATGGGATTCAATGTCCCTTGTACTTTCCCAACATTAATTGCATATTTCAAATATTATTTTAATGAATGTTATTACAAAATTATCCAAAATTTTTT
                     GGCCTCGTTTGGTT   GGA   GGAA                                                                                                                                                                                                             
                     ||||||||||||||   |||   ||||                                                                                                                                                                                                             T
                     CCGGAGCAAACCAA   CCT   CTTT                                                                                                                                                                                                             
                  AAC              CTA   TTA    AACCAAAGAACCAGAAAAAATACATGTATCCTTTCATTTAAAGGGTGATAAAAGGTATGGTCTACAAACCCTTACAGCCCTTTCATCGATCCTTTACATAAAATGAAAGGAAAGATTACAAACCAAATATGTACCTATCTTTTCATTCCTTGTAATTAAATGGTTAATATAGGAATCATAATTTTATCTTTCATAAGTTCTAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3