SE3160027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10624
  • Fragaria vesca
  • SE3160027
  • Mim
  • FrvMi3
  • LG3:19791589-19792033
  • TATATATATATA
  • TATATATATATACAGATTTTCTCAGGTGCGGATGTCCGCATTTATTCTTACGGTGCGGATTTCCACTTTACACTCACTTTTCAATCAAATTTTCACATCTCCACCGTCTAGTCTTTAGATACTAATGTATAGATCATCTTTGCAAAATTTCAACCAATTTGGTTATCATCAAGGCACTCAAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
                T        G          C                  C                    C         A                 C       C                                       A                C            -  CGATTAAACCA   GATGAACATAATTCTGTCGAAC
TATATATATATACAGA TTTCTCAG TGCGGATGTC GCATTTATTCTTACGGTG GGATTTCCACTTTACACTCA TTTTCAATC AATTTTCACATCTCCAC GTCTAGT TTTAGATACTAATGTATAGATCATCTTTGCAAAATTTCA CCAATTTGGTTATCAT AAGGCACTCAAA CT           ATG                      
|||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||           |||                      T
ATATGTGTGTGTGTCT GAAGAGTC ACGCCTGCAG CGTAAATAAGAATGCCAC CCTAAAGGTGAAATGTGAGT AAAAGTTAG TTAAAAGTGTAGAGGTG CAGATCA AAATCTATGATTACATATCTAGTAGAGATGTTTTAAAGT GGTTAAACCAATAGTA TTCCGTGAGTTT GA           AAG                      
                C        G          A                  A                    A         C                 A       T                                       C                A            T  -----CACAAA   ACAATATTTGTACTTGCCAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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