SE3150028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10625
  • Fragaria vesca
  • SE3150028
  • PIF/harbinger
  • FrvP6
  • LG3:252949-253241
  • TAT
  • AGAGCATCTCCAACAGTTTCCTCAAAATTTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATT                        AAA      TATAA    - -          CAA -   TCAAGCAATTTTTTTTTTCTCAAACTCCAACATATTCCCCAATTTGGAGATTTCTTGATCATTCCCTAAATTCTTCTATAAAATTATAGAGTT
    AGAGCATCTCCAACAGTTTCCTCA   TTTCTC     TGGG A AAGGAAAAGT   T GTT                                                                                             
    ||||||||||||||||||||||||   ||||||     |||| | ||||||||||   | |||                                                                                             T
    TCTCGTAGAGGTTGTCGAAGGGGT   AAAGAG     AAAG G TAAAACTTCT   T TAA                                                                                             
  AT                        --A      --CTA    A A          --- C   AACCCACAAAAAGAGATTGTCTAATAAGGAATTTTGAAAGAAGTTTTACCCTTTACACTCCTCTCTCTTTGAGTTTAAGAGGTATAAACGTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3