SE3120029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10626
  • Fragaria vesca
  • SE3120029
  • Mutator
  • FrvM13
  • LG7:12857411-12857825
  • TATAAGAAT
  • AGGATTAAATTCAGTTTAACCCTTTGAATTTTAGGGCTAAAATCAGTTTGATCCTTGACTTTTTGTTTTAATCATGTTGGTCCTTATACTCTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAGAATA                  A                               A      -A      G   T                A        TACAT     AC              T   -A   CTC       AATATCA    CTGAC      -C    -----------ATG     TCAC     AG      AAC
          AGGATTAAATTCAGTTTA CCCTTTGAATTTTAGGGCTAAAATCAGTTTG TCCTTG  CTTTTT TTT AATCATGTTGGTCCTT TACTCTCA     CATCA  TAAGTCCAAAATTT AAT  TGG   TAAAAAT       TTTG     TTGAAA  TGAC              GGGAT    ATTTG  CTTTTT   
          |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |||||| ||| |||||||||||||||| ||||||||     |||||  |||||||||||||| |||  |||   |||||||       ||||     ||||||  ||||              |||||    |||||  ||||||   C
          TCCTGATTTAAGTCAAAT GGGGAGTTTGAAATTCTGATTTTAGTCAAAC AGGAAC  GAAAAA AAA TTAGTGCAACCAGGAA ATGAGAGT     GTAGT  ATTCAGGTTTTAAA TTA  ATC   GTTTTTA       AAAC     AACTTT  ACTG              TCTTA    TAAAC  GAGAAA   
 TAATAAGAA                  G                               C      CA      -   T                C        TTACT     AA              C   AA   -AC       CCCACTC    -CAGA      TT    CAAAAAAGTAGCAA     TAAA     GG      CAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End