SE3130033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10630
  • Fragaria vesca
  • SE3130033
  • hAT
  • Frvh3
  • LG1:17692613-17693032
  • TATACTCN
  • CCTTAAGGCCAGTGGCGTAGCCAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNN       GC              G AAACTAAAC   - A    C  AA    ACATCAATT TACTAAACAAAAATAAATTTTTTAATCTTCTTTTATTTTTCTCCCTTGTACTTGGGGGCACATAATTGTTCATTCTTTTTTGCATTAGAGAAGCTAGTATCGCACTATTGCCTAAAGCCTTACCCGTTTGAATAAAAATATATATTATATCCACGACA
                  CCTTAAG  CAGTGGCGTAGCCA A         TAG G GGGT AG  TTTA         A                                                                                                                                                              
                  |||||||  |||||||||||||| |         ||| | |||| ||  ||||         |                                                                                                                                                              A
                  GGAATTC  GTCACCGCATCGGT T         ACT T CACT CT  CCCA         G                                                                                                                                                              
                 C       --              G ---------   C -    -  --    --------A TTTACTGGGAAGAGTGAAAAGTTAAGATAGGTAGTAACCAACTACGTTAATGGTGAAAGTACGAATATAATGTTTAATCAAATTTTAAACTGGGAGTGTGATTAATACAATGTATAATGAAGATATGCTAGATTCTTTTACAGAGTGTTATATTCGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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