SE3120035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10632
  • Fragaria vesca
  • SE3120035
  • Mutator
  • FrvM15
  • LG7:18096556-18096969
  • TATACTCNG
  • TGGATTAAATTCAGTTTATCCGGTTTAAGGTTAGCATCATTTCAATCCATATACTTTTAATTTTGAAAATTTACCCTTTAAAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCATTATTTT        A  C        C     A                     A    C              A                 -A   TTTTCATCAATCATGTCTAATTGTTGAAATTTCGCCTAATTTGGACGTTAATTTTGGCTTCATAACTCACTAAAATGGCTAATATAGTCATATAACAACATAAATCGTT
                           TGGATTAA TT AGTTTATC GGTTT AGGTTAGCATCATTTCAATCC TATA TTTTAATTTTGAAA TTTACCCTTTAAAGTTT  TAA                                                                                                             
                           |||||||| || |||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||  |||                                                                                                              
                           ACCTAATT AA TCAAATAG CCAAA TCCAATTGTAGTAAAGTTAGG ATAT AAAATTAAAACTTT AAATGGGGAATTTCAAA  TTA                                                                                                             
                   TTTTTATT        A  A        -     C                     A    A              C                 GA   AAGGTAAAAAAAAGAAGATTAAAAGTAATTAGTTCGGGTTAACGATTTTAAGACAGGTCAAACCTCCAATTAACGATCGTATTTTAGAATCCCTTTTTCCAGTATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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