SE3120036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10633
  • Fragaria vesca
  • SE3120036
  • Mutator
  • FrvM16
  • LG5:1106480-1106926
  • TATTATTTC
  • ATGAGATAATTTCACTTTACTACCCTGAACTTTAGGTCTAAAATCAGTTTGATACCTCATCTTTTTTTTAATCAGTTTCATACCTAAACTTTCAAAATGACATCAATCTCGACCAAAATGACTAAAATAGCCCTGGTTAATTTTTTTACCCTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTATTTC         -------T    C                                                      -                                                                                C     -AGA -  - AGAATGACAGCGGCGACTGCCGGGGGAGGAGGAGGGGCTGCAGCAGGAGCCC
         ATGAGATAA        TTCA TTTACTACCCTGAACTTTAGGTCTAAAATCAGTTTGATACCTCATCTTTTTTTT AATCAGTTTCATACCTAAACTTTCAAAATGACATCAATCTCGACCAAAATGACTAAAATAGCCCTGGTTAATTTTTTTAC CTCTC    G TT A                                                    
         |||||||||        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    | || |                                                    A
         TACTTTATT        AAGT AAATGATGGGACTTGAAATCCAGATTTTAGTCAAACTATGGAGTAGAGAAAAAA TTAGTCAAAGTATGGATTTGAAAGTTTTACTGTAGTTAGAGCTGGTTTTACTGATTTTATCGGGACCAATTAGAAAAATG GAGAG    A GG C                                                    
                  CCTTTTTT    C                                                      A                                                                                A     AGAG G  A GGAGGTTTAGGTGGTGTACCGACCGCGGCCGTAGGTGGGGATGGTGGTCGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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