SE3130037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10634
  • Fragaria vesca
  • SE3130037
  • hAT
  • Frvh4
  • LG5:11916655-11917347
  • TAAGTAGC
  • AGTAGCTCTAGGGGTGGGCAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA   A   C             AAAATC   TAATCCCGAACCCGTCCCGAAATTTGTCGGGACGGGACGGGATTTAAATCTCAAAATGTCAGGCCCGTCCCGTCCCGTCCCGTCTTGTCTCATCCTTAGACAACGGGACGGAACGTGGGACGGATAATTCAAGTCCCGTTTAGGTCTGTCATGTCCCGACTATTTTAATGATTGATTTTTTATTAATTAATATGTGATTTGAACCTTTCATTTAAGTGTTTTAATCTTAGCTCTTTATTTCTTTAAGTTACTAGGTTGTCTCCAATTCAATAACAATGATGTTTAATACTTTAATTTGTTGATTGTTGTAGACTCTCTT
  AGT GCT TAGGGGTGGGCAT      TCG                                                                                                                                                                                                                                                                                                                               
  ||| ||| |||||||||||||      |||                                                                                                                                                                                                                                                                                                                               C
  TCG TGA ATCCCCACCCGTA      CCC                                                                                                                                                                                                                                                                                                                               
 C   A   -             ------   TGCCCTATCCTACCCTATATCGATTAGGGTGCCGGGCAGGGCCTATAACTTTAACCCTGCCCTATCCTGTCCGAAACGCAAAAAATCTAAAGTAGACTGGGCCCGGGATAGGGCCAGCCCTAACCTGCCCAGGTCAGGGCCTATTTTTTTCAACTTTTATTTGAACATTCGTTTTCTTTTCCAAAGTATCAAAATATCACGAAAAATGAGATAATTCATATTTGTTCATGAACATTGTATAAATGTTCATGTTGTGCCACATTATTTTCTCAAATATAAAGAATGAAAGAGATTTGAATAGTAGTGATGATAACACGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End