SE3120038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10635
  • Fragaria vesca
  • SE3120038
  • Mutator
  • FrvM15
  • LG2:211327-211738
  • TATACTCNG
  • GGATTAAATTCATTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNCATGTTATTA       A    T    CGATTTTTACC         A            TTC          CCATT    C            C    A   -AAAA   C   A              CCT    A                      C       TTGA   ---------------  TAACTCATTTTAAAGGCTGAAATAGTCATA
                           GGATTAA TTCA TTTA           CCTTTTGAG TTTGGGGTTAAC   ATTTTAGTCC     CTTT AATTTTGAAAAT TATC TCT     TTT CAA TTTCATAAATCATG   AATT TTGAAATTTCGTCTAATTTGGA GTTAATT    CTT               TA                              
                           ||||||| |||| ||||           ||||||||| ||||||||||||   ||||||||||     |||| |||||||||||| |||| |||     ||| ||| ||||||||||||||   |||| |||||||||||||||||||||| |||||||    |||               ||                               
                           CCTAATT AAGT AAAT           GGGAAATTC AAACTCCAATTG   TAAAGTCAGG     GAGA TTAAAATTTTTA ATGG AGA     AAA GTT AAAGTATTTAGTAC   TTAA GACTTTAAAGCAGGTTAAACCT CAATTAA    CGA               TT                              
                  ATTATTGTA       A    C    -----------         C            TAA          AATAT    A            A    -   ATATC   A   A              AAT    C                      A       ----   TCATACTTTAGAATC  TTACCAGGATATTTTGTAAAACACAACAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End