SE3120039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10636
  • Fragaria vesca
  • SE3120039
  • Mutator
  • FrvM15
  • LG3:30208662-30209065
  • TATACTCNG
  • ATATATAGGATTAAATTCAGTTTACCATCTTAAAGTTTGGGATTAACATCATTTCAGTCCTCATGCTCTCAATTTTGAAAATTTACTCCCTATAGTTACTAATTTTCATAAATCACGCTAAATTGCTGGAATTCCGTCTAATTTAGATATTAATTTTGACTTCAT

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNNCTA      -AG      A  C        A      A       A                  TC     CTC                  C   T    A T          A    C -    A                      A   A    TTT  A  -    AACTCACTTTAAAAGCTAAAATA  C  -   ACAACATAAATCGC
                     ATATAT   GATTAA TT AGTTTACC TCTTAA GTTTGGG TTAACATCATTTCAGTCC  ATGCT   AATTTTGAAAATTTACTC CTA AGTT C AATTTTCATA ATCA G CTAA TTGCTGGAATTCCGTCTAATTT GAT TTAA   TG CT TCAT                       GT AT TTA              
                     ||||||   |||||| || |||||||| |||||| ||||||| ||||||||||||||||||  |||||   |||||||||||||||||| ||| |||| | |||||||||| |||| | |||| |||||||||||||||||||||| ||| ||||   || || ||||                       || || |||               
                     TATATA   CTAATT AA TCAAATGG AGAATT TAAATCC AATTGTAGTAAAGTCAGG  TATGA   TTAAAACTTTTAAATGGG GAT TCAA G TTAAAAGTAT TAGT C GGTT AACGACTTTAAGGCAGATTAAA CTA AATT   AC GA AGTA                       GA AT TTT              
                    A      ATA      A  A        G      C       C                  TA     AAA                  A   T    A T          G    A A    -                      C   C    --T  -  T    ------------------CTTTA  -  C   TTACCAGAATATTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End