SE3130040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10637
  • Fragaria vesca
  • SE3130040
  • hAT
  • Frvh5
  • LG3:19180547-19181216
  • TATACTCN
  • AGTAGACCTGTAAATGGACCGGATCTTGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCCTCCTC                          T     G    CGTTCCGGATCCGTGGTTTTTAAACGGGTTTGGATCAAAAATTAGACCCGTTGATCTGTTAAGGACCCGGACCCGTTAACCCGTTTATTAAACAGATCGGATACGGATCGAGGTTGATCCGATCCGTTAAGGACCCGGATCCGTTTTAAAATAATTAAATAATATAGTAATTATTTGGATAACATAAACGTCTAAATTACGTCTAAAGTATGATCATTTGATGAAGTTGAAGATTACGATGTCTATGTTCTTTTTATGCTCTTTGCTAAATACATTGGAGCTATAATATTTT
                        AGTAGACCTGTAAATGGACCGGATCT GATCC GACC                                                                                                                                                                                                                                                                                                    
                        |||||||||||||||||||||||||| ||||| ||||                                                                                                                                                                                                                                                                                                     
                        TCATCTGGACATTTACCTGGCCTAGA CTGGC TAGA                                                                                                                                                                                                                                                                                                    
                  GACTCC                          C     C    TCCATCTAAGCATAAGCCTAGGCATTATCTTTAAAACCTAGGCCTAGGCTGGGCAATGGGCGGCCTAGAAACTATCGATCTAGGTTTAGGCCTAGGCCGCCCAATTGCCTATGGGCTGGGCAATTAGGCTAGACAAATACTAATATTTATAAAAATTTGAAATTTATTATTAAAGAATTAAAATAGTATTTAAAAGTATTTTATGATTACTTTATAATATTGTTTTATTTACAAATGTAGTTTTCAACTTAATGTACCGGTTTTATGAAAAATTGTTATTTGATTATATAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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