SE3140041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10638
  • Fragaria vesca
  • SE3140041
  • CACTA
  • FrvC2
  • LG2:12859313-12859511
  • TAT
  • CACTACCACAAAATGGAGCAAAGGCCACACATGTTATGTGGGCAATAGGGGTGTTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCCT           A            CCA        --A             G        ATCTCATAAAA   C   TA    A   TTTTCTCTCATTCTT
                    CACTACCACAA ATGGAGCAAAGG   CACATGTT   TGTGGGCAATAGG GTGTTGCA           TCT ATA  TGTG CAA               
                    ||||||||||| ||||||||||||   ||||||||   ||||||||||||| ||||||||           ||| |||  |||| |||                
                    GTGATGGTGTT TACTTCGTTTTC   GTGTATAG   ACACTCGTTATCT CACAACGT           AGG TAT  ACAC GTT               
                 TCT           A            --A        AAC             G        --------AAA   A   TC    C   TACTTCCATAATCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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