SE3130042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10639
  • Fragaria vesca
  • SE3130042
  • hAT
  • Frvh6
  • LG6:12578654-12578861
  • TATACTCN
  • TCTAGACAGTGGTGTTCACATGGTCACCTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCAGGG       ----                        CTAGTA  T                                                 TAT  TTT    GT
                      TCTAGAC    AGTGGTGTTCACATGGTCACCTAG      AC AAGAAAATCATGGTCAATCACCGTTGGATGTAAATCCAAGGGTGGGAAG   CA   TAAC  
                      |||||||    ||||||||||||||||||||||||      || |||||||||||||||||||||||||||||||||||||||||||||||||   ||   ||||  T
                      AGATCTG    TCACCACAAGTGTACCAGTGGATC      TG TTTTTTTAGTACCAGTTAGTGGCAACCTACATTTAGGTTCTCACCTTTT   GT   ATTG  
                             GGAG                        ----AC  T                                                 ---  TTT    AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3