Plant MITE

SE3120044

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10641
Fragaria vesca
SE3120044
Mutator
FrvM17
LG6:1934085-1934673
TATTTAAGA
AAAGGGTACGGCTATTTCCACCCTACTAAATGCTCAATTCACCT

Secondary structure and sequence

TSD TIR

5'

3'

TATTTAAG       A        TC  C             CAA       -CA          ---  TATCTTTAACGTTCTAATTCTGCCCTTACAAT  ----     -   TCT     TTATTTTCTTTCTTTTATTTTTTTCAATCTGATAAAATATAAAAATATATACAAATAGTCAAATATCTCATCTATATATTAGACGCAGACCTCCATTTTTCTCAAACCACATCCTATATATGTTCTCCTCGATCTATTTTTTGAGTTCCTTCTTTACGATTATATATGAAAGACTACATTTGAAGTCATAAAT
        AAAGGGT CGGCTATT  CA CCTACTAAATGCT   TTCACCT   CGTCTTATTT   TT                                TT    TGAGA AAA   GGTTT                                                                                                                                                                                                 
        ||||||| ||||||||  || |||||||||||||   |||||||   ||||||||||   ||                                ||    ||||| |||   |||||                                                                                                                                                                                                  
        TTTCCCA GTCGATAA  GT GGGTGGTTTATGA   AAGTGGG   TAAAATTAAA   TA                                AT    AAAGT ATG   ATTGG                                                                                                                                                                                                 
  AAAGAA       C        CA  A             AAC       ATA          ATT  --------------------------------  TTAT     T   ---     GGTATTAGTTATTAAAAACACTTTTATATTATACTTTGATTTTAGATATTTTAGGTTTGTTATTGTTAAGAGGCGTAGAAATATATCCTTTTTTTTAAAGAAATATAGAAAATTTAGTCTAAACTCTTAGTGAAGTTAGAAATTGTCCTACCAATCTGTCATACTAACCTAACAAGCAAGAATAAAAATAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120044

TATTTAAGAAAGGGTACGGCTATTTCCACCCTACTAAATGCTCAATTCACCTCACGTCTTATTTTTTATCTTTAACGTTCTAATTCTGCCCTTACAATTTTGAGAAAATCTGGTTTTTATTTTCTTTCTTTTATTTTTTTCAATCTGATAAAATATAAAAATATATACAAATAGTCAAATATCTCATCTATATATTAGACGCAGACCTCCATTTTTCTCAAACCACATCCTATATATGTTCTCCTCGATCTATTTTTTGAGTTCCTTCTTTACGATTATATATGAAAGACTACATTTGAAGTCATAAATCAAATAAAAATAAGAACGAACAATCCAATCATACTGTCTAACCATCCTGTTAAAGATTGAAGTGATTCTCAAATCTGATTTAAAAGATATAAAGAAATTTTTTTTCCTATATAAAGATGCGGAGAATTGTTATTGTTTGGATTTTATAGATTTTAGTTTCATATTATATTTTCACAAAAATTATTGATTATGGGGTTAGTATTGAAATATTTAATTTAAAATTAAAATATAGGGTGAACAAAGTATTTGGTGGGATGACAATAGCTGCACCCTTTAAGAAA

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