Plant MITE

SE3150047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10644
Fragaria vesca
SE3150047
PIF/harbinger
FrvP7
LG2:8723276-8723667
TAT
AGAGCAACTTTAGCA

Secondary structure and sequence

TSD TIR

5'

3'

TATT      A        GA    A      ----   ----- TTT   T   T AGAGAGCGTGTTTAGTTTTTTTTTTTTATATTTTCGGAGCTCCAGCAGACTAGCCAAAGTTAAACTATTATGACTTTTAGCTATCTCGCTAGCTAAATATAGAGAGCGAGATGACTTAGATGAGGCTAGCTATAATTTAATACATTCCT
    AGAGCA CTTTAGCA  CTCT TATTTT    AGC     T   AGC ATT T                                                                                                                                                     
    |||||| ||||||||  |||| ||||||    |||     |   ||| ||| |                                                                                                                                                      
    TCTCGT GAAATCGT  TACG ATCGGT    ACT     T   AAA ATC G                                                                                                                                                     
  AT      A        --    -      AAAA   CAATT ---   -   A TTTAATCGATTTTACAGTAAAACCGATCAGTGAAATCTTTGCGCCGACGTAGTTACGAGAGATAAAATCGATCGTAATGTATTTGTAATAAGAAGTTTATTTCTAATTTATCAAATTTATATAAATATATAGTGCATTTTATAGAATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150047

TATTAGAGCAACTTTAGCAGACTCTATATTTTAGCTTTTAGCTATTTTAGAGAGCGTGTTTAGTTTTTTTTTTTTATATTTTCGGAGCTCCAGCAGACTAGCCAAAGTTAAACTATTATGACTTTTAGCTATCTCGCTAGCTAAATATAGAGAGCGAGATGACTTAGATGAGGCTAGCTATAATTTAATACATTCCTTGTAAGATATTTTACGTGATATATAAATATATTTAAACTATTTAATCTTTATTTGAAGAATAATGTTTATGTAATGCTAGCTAAAATAGAGAGCATTGATGCAGCCGCGTTTCTAAAGTGACTAGCCAAAATGACATTTTAGCTAATTTGACTAAAATTTAACTCAAAAATGGCTAGCATTGCTAAAGATGCTCTTA

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