SE3120048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10645
  • Fragaria vesca
  • SE3120048
  • Mutator
  • FrvM19
  • LG1:5713842-5714271
  • TATACTCNG
  • GTATATGAGGGAGCCTTTCTAGTGAGGACTCTTAAGTTGAGGACTTTTCGGTTTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNNCCT       A                                      -----------          GGTTTAAAAAA              AC  T  G      CAT     C     T     TTA                  A            ------------CAAATT         T   ATAACAAACTAGATCAAATTAA   ACGAACCAAATCTGTCAAATAT
                     GTATATG GGGAGCCTTTCTAGTGAGGACTCTTAAGTTGAGGACTT           TTCGGTTTAT           CCCATTTTTCGATC  AT TT ACATCT   CCGTT AGTTT TAGGT   TATGAGTAGATCATTTCT CAAATTTTCAGC                  GGTGTTCGT AAG                      TGG                      
                     ||||||| ||||||||||||||||||||||||||||||||||||||           ||||||||||           ||||||||||||||  || || ||||||   ||||| ||||| |||||   |||||||||||||||||| ||||||||||||                  ||||||||| |||                      |||                       
                     TATATGT CCCTCGGGAAGATCACTCCTGAGAATTCAACTCCTGAA           AAGCCGAATA           GGGTAGAAGGCTAG  TA AG TGTAGA   GGCAA TCAAA ATCCA   ATATTCATCTAGTAAAGA GTTTAAAAGTCG                  CCGTAAGCA TTC                      ATA                      
                   AG       C                                      CAACTCCTGAA          -----------              AA  T  G      ACT     A     C     TAA                  G            ATATAACTTTTAACAATT         -   ---------------ACACTAA   GTTAATACTTAAACTGGCCAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End