SE3160049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10646
  • Fragaria vesca
  • SE3160049
  • Mim
  • FrvMi4
  • unanchored:7853134-7853530
  • ATATATATATATATA
  • ATATATATATATATACCGATCGTTATCAGGTGCGGACGTCCGCACGGCTCTTAAAGTGCGGACGTCCCTCCTTTCGTCACCATACGGCACAGGCGAGGGCCCCGCCTCCACCCCA

Secondary structure and sequence

TSD    TIR
5'



3'
               ---AC  A  -   A                    G  T     A       CG       T         A      A A         CC             A   CTTCCCCGACCACTTTCCATCCCCGGCAAGTCCACCGAATTCCAGTTTTCCGGCCAGATTGACTTTGTTTGAAGTT
 ATATATATATATAT     CG TC GTT TCAGGTGCGGACGTCCGCAC GC CTTAA GTGCGGA  TCCCTCC TTCGTCACC TACGGC C GGCGAGGGC  CGCCTCCACCCCA CAG                                                                            
 ||||||||||||||     || || ||| |||||||||||||||||||| || ||||| |||||||  ||||||| ||||||||| |||||| | |||||||||  ||||||||||||| |||                                                                             
 TATATATATATATA     GT AG CAA AGTCTATGCTTGCAGGCGTG CG GAATT CACGTCT  AGGGAGG AAGCGGTGG ATGCTG G CCGCTCCCG  GCGGAGGTGGGGT GCC                                                                            
A              CATAA  C  A   -                    A  -     C       AA       C         C      C G         -C             C   TGAGGTCGTCGAAGGGGCTGGTGAAAGGGAGGAGCCACTCAGGCGGCTTAAGGTCAAAAGGCCGGTCTAATGGGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End