SE3150052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10649
  • Fragaria vesca
  • SE3150052
  • PIF/harbinger
  • FrvP7
  • LG6:11368153-11368562
  • TAT
  • AGAGCATCTTTAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATA      T        --   C            ---  TTAAATT ----------   TCAAATTAGCTAAAACGTCATTTTGGCTAGCCTCTTTAGAAATATGGCTACATCAATGTTCTCTATTTTAGCTAGCATTACATCAACATTATTCTTCAAATAGAAATTAAATAGTTTAAATATATTTATATATCATATAAAATATCTTACAAGAA
    AGAGCA CTTTAGCA  ATG TAGCCATTTTTA   AG       T          TAG                                                                                                                                                           
    |||||| ||||||||  ||| ||||||||||||   ||       |          |||                                                                                                                                                           A
    TCTCGT GAAATTGT  GAG AGATAAAATCGA   TC       G          TCG                                                                                                                                                           
  AA      T        CT   -            AAA  ------- ATAAAATCTC   CATAAATCGAAAAAAACCTACAAAATTCTCGAGGTCGTCTGATCGGTTTGAATTCGATAATATTGAAAATCGATAGAACGATCGATATAAATCGATCGCTCAATCGAGTTTACTCTGGCTCAATCGAGTTTACTCCGATCGATATTAAATAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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