SE3120054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10651
  • Fragaria vesca
  • SE3120054
  • Mutator
  • FrvM20
  • LG2:14772930-14773719
  • TAAATCTTT
  • GAGAAATTTTATTAACACATCCCTAAATGTTATATACACATATCTTTTTTTATACA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATCTTTAA                          A              A  TTT   T     AATTA   AA      G ---A    TGTAAAATTACCAAAAAATACATTCATATCAAAAGTAAAGAAACTTAGTTGAAATAAAATATATTGTTTAAAATGTTAATATTAACTATTGTACTTCAAACATTTTTTAATTTTTAACTTGAATCGAGTACCAATATTTTGACACCACATATGAATATTATGCAATGGTTCCCAAGAATCGATTAATTCATTCTAATGCTGAAAGTTCCTTTAAGGACTTTGATGATGTATTGTCTTGTTTTGTTTTGATTCGTAGGCTCAAGAAATCTTGGAATCAATTTGAGTAAGAGGCTCTTTGGGAATAA
           GAGAAATTTTATTAACACATCCCTAA TGTTATATACACAT TC   TTT ATACA     TAT  GACTTT T    GGTA                                                                                                                                                                                                                                                                                                                 
           |||||||||||||||||||||||||| |||||||||||||| ||   ||| |||||     |||  |||||| |    ||||                                                                                                                                                                                                                                                                                                                 A
           CTCTTTAAAATAATTGTGTAGGGATT ATAATATATGTGTA AG   AAA TATGT     ATA  TTGAAA A    AATT                                                                                                                                                                                                                                                                                                                 
  AATTTCTAA                          A              G  TAT   T     GGTGG   -A      G ACAA    GTAAACTGATCTATGTGCATAATTTGAAGGATGTTATGGGAGTAAATTGTATGTGTTGAATATGTGATTTATGTGTTGAGTAAGTGATGTGTATTAAAAGATCTAGCCAATGAGTTAAAAAAAAAAATTTTAGTGTAATGATTCTTAAAAGAGTTTTACAAAGTATAAAGGAGCATGACAAAGTAGAGTAACTGTATAAGAAGTTTACATAAATTAAAAAGAGATTTCGCAAAGTGGAACAATTCTAGAAGGAGCTCCCTAAAGTAAAACAATTGTAGAAGAGGGTAGTCAAAAGGAGCTGTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End