SE3160057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10654
  • Fragaria vesca
  • SE3160057
  • Mim
  • FrvMi3
  • LG3:22082074-22082484
  • TATATATATACA
  • TATATATATACACAGCTGATCAGGTGCGGACGTCCGCACCAAAGTGCGGATTTCCATTTTTTGCACCACTTCCTGATCGAATTTCCTCAAACTTCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
     A        CA                               ------                T                                    CTAG                 CTGTAAAATTTCAGCCAATTTGGTGATCGTTAAGGCCCTCAAACTTGCGTTTTTCTGTTATGTACCTGAACCGGACAGAAT
  TAT TATATACA  GCTGATCAGGTGCGGACGTCCGCACCAAAGT      GCGGATTTCCATTTTT GCACCACTTCCTGATCGAATTTCCTCAAACTTCCTT    ACATATCTAGATCATCT                                                                                 
  ||| ||||||||  |||||||||||||||||||||||||||||||      |||||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||                                                                                 A
  ATA ATATATGT  CGACTAGTCCACGTCTGCAGGCGTGGTTTCA      CGCCTAAAGGTAAAAA CGTGGTGAAGGGCTAGCTTAAAGGAGTTTGAAGGAA    TGTATAGATCTAGTAGA                                                                                 
AT   C        TA                               AAACCA                -                                    ----                 ACACATCTAGTAGAGACGTTTTAAAGTCGGTTAAATTACTAGCAATTCCGGGAGTTTTAGCTTATTGTTTAGCTGCCGGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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