Plant MITE

SE3120058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10655
Fragaria vesca
SE3120058
Mutator
FrvM22
LG4:15425186-15425357
TATACTCNG
CTAG

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNC    AGATAC                                  CC                A   -------- -    AG   T  TT
                   CTAG      GGAAGCAAATTTGCTCCCCACCTTCCTCCCCACC  TTTAGATGAATGCCAA TGT        C CTTT  GTT AA  
                   ||||      ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||        | ||||  ||| ||   
                   GATC      CCTTCGTTTAAACGAGGGGTGGGAGGAGGGGTGG  AAATCTACTTACGGTT ACA        G GAAA  CAA TT  
             CATAGA    ------                                  TA                C   ATAAAAGT A    AA   T  TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120058

TATACTCNGTCATNCTNNCCTAGAGATACGGAAGCAAATTTGCTCCCCACCTTCCTCCCCACCCCTTTAGATGAATGCCAAATGTCCTTTAGGTTTAATTATTTTAACAAAAAGAGTGAAAATAACACTTGGCATTCATCTAAAATGGTGGGGAGGAGGGTGGGGAGCAAATTTGCTTCCCTAGAGATAC

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