SE3120059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10656
  • Fragaria vesca
  • SE3120059
  • Mutator
  • FrvM5
  • LG4:4740978-4741369
  • TATACTCNG
  • GTAAATTGTGAGAAATTTTTCAGAGCTCCCGAAGGACCACGCGGCAGTCTGACGTGGTTCTCCATTTCATTCAAATTTTGACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNC    A                  A                 C                    - A     TTC             -   A     - TCATGAAAAACTATTTTAGCGAATTTGTCAAATACCATTTTGGGTTTCTTATTGATTTTTTAAATTCTATACCCTAAACCCCTATTAACCATGTACCCT
                  GTAA TTGTGAGAAATTTTTCAG GCTCCCGAAGGACCACG GGCAGTCTGACGTGGTTCTC C TTTCA   AAATTTTGACATA TAG TTTTT A                                                                                                   
                  |||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||   ||||||||||||| ||| ||||| |                                                                                                   A
                  CGTT AATGCTCTTTAAAAAGTT CGAGGGCTTCCTGGTGC CTGTCAGACTGCACCAGGAG G AGGGT   TTTAAAATTGTGC CTT AAATA T                                                                                                   
                      A                  A                 A                    A A     TAA             A   -     A GTTGATTTTATATTTGATTCTAAAAGATATAAAACATTTTACGGGCAGAATCCAGAAAATACTCAAACCGAATCCCAAATCCCATATTCTAAATCCCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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