SE3130060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10657
  • Fragaria vesca
  • SE3130060
  • hAT
  • Frvh7
  • LG3:17155985-17156187
  • TATACTCN
  • TATATACACTGGCGGAACTAAGAAGAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTC    T   C           A  --A    CCAAA   T    T     CCCCC  TC   T   -------GA           CT   A   ATTTTAA     T
                    TATA ACA TGGCGGAACTA GA   GAGA     GGG GCCA GGCAC     AC  CTA GTT         CACATTTGAAA  ATT CCA       TCAAC 
                    |||| ||| ||||||||||| ||   ||||     ||| |||| |||||     ||  ||| |||         |||||||||||  ||| |||       ||||| T
                    ATAT TGT ACCGCCTTGAT CT   CTCT     CCC CGGT TTGTG     TG  GAT CAA         GTGTGGATTTT  TAA GGT       GGTTG 
                        C   C           C  AAA    TTAGC   C    -     -TAAT  TT   T   ACCCCCACG           --   A   -AACAAA     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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