SE3120061

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10658
  • Fragaria vesca
  • SE3120061
  • Mutator
  • FrvM23
  • LG6:17833095-17833548
  • TATAAATTG
  • AATTGTAGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATA    G     ATAATT     T    C      A       ATTT                                       A        T              A          CCC         AA     C           ATTCCATCAAATTT   ACTTTAGACTTTCAAGATTAACCAATTTACTTATCAAAATTTCAATATCGACCAACTTTAACTTTTAATTTTC
    AATT TAGGC      GTCAA TTGT ACCCTA CTTTCAC    GTGTCAATTTGTTACCCTAATTTTCATTTCAGCCAATTT CTACCCTA CTTTTCATAATTAG CAATTTGCTA   TAACTATTA  TCTGC AATTTGCTATC              GTT                                                                         
    |||| |||||      ||||| |||| |||||| |||||||    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||   |||||||||  ||||| |||||||||||              |||                                                                          
    TTAA ATCCG      CGGTT AACG TGGGAT GAAAGTG    CACAGTTAAACAATGGGATTGAAAGTAAAGTTGGTTAAA GATGGGAT GAAAAGTATTAGTC GTTAAACGAT   ATTGATAAT  AGACG TTAAACGATGG              AAA                                                                         
 ATG    -     AAAAAT     T    A      A       GAAT                                       C        T              G          AAA         AA     A           --------AATACA   ATTTTAATCGGTTGAACGATGTAAAAATAGTAAAATAAAACAAGTAAAGAAATAGGTTTGTACTTAATTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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