SE3150062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10659
  • Fragaria vesca
  • SE3150062
  • PIF/harbinger
  • FrvP11
  • LG4:1180389-1180739
  • TAT
  • AGGCCTCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTG           TTTTG       AT    AACATGATAGGAAAGTTGTTCATTTCCTGCGTTTGGAAAAGCCAAAGGAAATGAAAGACTTTCCTGATTGAAAGGAAAATATGGGGGAAAGTGGCTCATTCCAAAATCCAATGGAACCACTTTCATTCATTCTTTCTCTGTATTT
                    AGGCCTCGTTT     GCGGAAA  ATGC                                                                                                                                                 
                    |||||||||||     |||||||  ||||                                                                                                                                                 A
                    TCCGGAGCAAA     CGTCTTT  CCTT                                                                                                                                                 
                  AG           CCAAA       --    TCATTAATTAAGGAGAGAGGGTACCCTTCTCTTTCACTTGTCCTTATTTTAAAGTTCTCTTCAAACATAAGACTACAAACCATTGCGTTTTTTTCAGTAACCCTTTCAAGAATTTTTTATATTATTTTATAATACTACACTCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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