SE3150064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10661
  • Fragaria vesca
  • SE3150064
  • PIF/harbinger
  • FrvP8
  • LG1:7416323-7416711
  • TAT
  • AGAGCAAATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTA      A    AACCATT    G --       ACCAATTTTTA  ------    -   AATACACTATTCATTTAAATCAATCTTTGATATTCAGTTCAACAATACAACAACCAGATTAATTCGAGGACCAATAACTATTCTTTTGTGGGTCAAACAAAAAAATATTCATTACAAAGGAAAAATGCAAGTGCAAATTCATGTGA
                     AGAGCA ATGC       TTGG T  GGGTTAG           TC      CCGA GTT                                                                                                                                                  
                     |||||| ||||       |||| |  |||||||           ||      |||| |||                                                                                                                                                   
                     TCTCGT TACG       TAGT T  CCCACTT           TT      AATC ATT                                                                                                                                                  
                   AA      G    -------    - AC       -----------  CTACCC    T   TTTTAATCTGATTTTTGTCGAAGGTGGGAACTACTTAACCAGACCCAATCCACACCCAGAATGCACCCCTTGTGGACTGGTCTCATTATCCACCCAATTAAGAGTGGGGAACTAATCAGATCTAGTTAAACTGGCACCGGGGTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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