Plant MITE

SE3160065

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10662
Fragaria vesca
SE3160065
Mim
FrvMi6
LG3:13513898-13514269
ATATATATATAT
ATATATATATATATCAGGGCCCTTTCAATGAGGGATCCTGTTTTTTGTTTATTTCTAGGGATATGGT

Secondary structure and sequence

TSD TIR

5'

3'

               ---                              -           T    C        T   ATTTGATAAACTTCC    CACAAAATCACATCTCCACCGTTCAGTTTGTAGGTGTATATGAGTAGATCATTTCTGAAAATTTTCAGAAAATTTGGTGATCGTTAAGTCATTCAAATGTTT
       ATATATAT   ATATATCAGGGCCCTTTCAATGAGGGATCC TGTTTTTTGTT ATTT TAGGGATA GGT               TGAT                                                                                                      
       ||||||||   |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||               ||||                                                                                                      G
       TATATGTG   TATATAGTCCCGGGAAGGTTACTCCCTAGG ATAAAAAACAG TGAA ATCCCTAT CCG               GGTG                                                                                                      
CTATATA        ACA                              G           -    A        -   ---------------    TGGTAATCTAAACAAAAAATTACCCAAAACTACCGACTCTAATTTTATTTTTTAAATTGTGAATACAGTTTGGATGTGGCAAGTTCTAGTAATGTTTATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3160065

ATATATATATATATCAGGGCCCTTTCAATGAGGGATCCTGTTTTTTGTTTATTTCTAGGGATATGGTATTTGATAAACTTCCTGATCACAAAATCACATCTCCACCGTTCAGTTTGTAGGTGTATATGAGTAGATCATTTCTGAAAATTTTCAGAAAATTTGGTGATCGTTAAGTCATTCAAATGTTTGATTTATTTGTAATGATCTTGAACGGTGTAGGTTTGACATAAGTGTTAAATTTTTTATTTTAATCTCAGCCATCAAAACCCATTAAAAAACAAATCTAATGGTGTGGGCCTATCCCTAAAAGTGACAAAAAATAGGGATCCCTCATTGGAAGGGCCCTGATATATACAGTGTATATATATATC

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