Plant MITE

SE3130067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10664
Fragaria vesca
SE3130067
hAT
Frvh8
LG6:36430530-36430909
TATACTCN
CAGTGGCGTAGCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCATAGTGGG   T       CT   AACTC   TT         AAAAC     -  -    --- TAA    A   AAAATATCGATCGATAACGTAGTTGCTTTATGGAAAATCTTTTAATTGTTGGATTATACCTAGCATTATAAATTATCTCGTTAGATTGATTCATTAGAGAACCATCGATTATGAATTCCCC
                          CAG GGCGTAG  AGA     GAT  AGAAGGGTC     TGAAG TG ACTA   T   GTTA GAC                                                                                                                         
                          ||| |||||||  |||     |||  |||||||||     ||||| || ||||   |   |||| |||                                                                                                                         T
                          GTC CCGCATC  TCT     CTG  TCTTCCCAG     AGTAT TA TAGA   C   AACT AAT                                                                                                                         
                  GGGTGATA   C       CC   -CCCC   -C         -----     G  C    AAC ---    -   CAATTTACAAGATGTATCTTTACTGGGAGGATTAATACAAGAATTTTTACAGTAATGAAAGTAATTAAAGATAACCATTACAAACTATTTAGGGAAGAGTCGAAAATATTTATGTTTCCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130067

TATACTCNGTCATNCTNCATAGTGGGCAGTGGCGTAGCTAGAAACTCGATTTAGAAGGGTCAAAACTGAAGTGACTATTAAGTTAAGACAAAATATCGATCGATAACGTAGTTGCTTTATGGAAAATCTTTTAATTGTTGGATTATACCTAGCATTATAAATTATCTCGTTAGATTGATTCATTAGAGAACCATCGATTATGAATTCCCCTTTCCTTTGTATTTATAAAAGCTGAGAAGGGATTTATCAAACATTACCAATAGAAATTAATGAAAGTAATGACATTTTTAAGAACATAATTAGGAGGGTCATTTCTATGTAGAACATTTAACTAATCAACCAAAGATCATGTATGAGACCCTTCTCGTCCCCCTCTCCCTACGCCCCTGATAGTGGG

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