Plant MITE

SE3150069

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10666
Fragaria vesca
SE3150069
PIF/harbinger
FrvP7
LG6:12092684-12093071
TAT
AGTGCATCTTTAGCA

Secondary structure and sequence

TSD TIR

5'

3'

TATA  T  A         AT        TTTTT  GTTA    TTTATCAAATTAGTTCAAATGTTATTTTGGCTAACCACTTTAAAAATGTGTATGCATCAATGCTCTCTATTTTGGCTAGCATTACATTAATAATATTCTTCAAATAAAGATTAAATAATTTAAATGAATTCATATATCACCTAAAATATCTTAAAT
    AG GC TCTTTAGCA  GTTAGTCA     CA    AATT                                                                                                                                                            
    || || |||||||||  ||||||||     ||    ||||                                                                                                                                                            T
    TC CG AGAAATTGT  GAGATAAA     AT    TGAG                                                                                                                                                            
  AA  T  A         AT        -----  ----    GAATCGATAAAATCTCTCGCATAAATCGAAAAGACCTACAAAATCCTCGAGGTTGTCTAATCGATTTGAACTCGATAATACTGAAAATCGATAGATAGATAGATATCGATCCCTATATTGAGTTTACTTACTCTGATCGATATTAAATTATGTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150069

TATAAGTGCATCTTTAGCAATGTTAGTCATTTTTCAGTTAAATTTTTATCAAATTAGTTCAAATGTTATTTTGGCTAACCACTTTAAAAATGTGTATGCATCAATGCTCTCTATTTTGGCTAGCATTACATTAATAATATTCTTCAAATAAAGATTAAATAATTTAAATGAATTCATATATCACCTAAAATATCTTAAATTGAATGTATTAAATTATAGCTAGTCTCATTCATTTGAGTTATATCCCTAGCTATAGATAGATAGATAGCTAAAAGTCATAATAGCTCAAGTTTAGCTAATCTGTTGGAGCTCCTAAAACATCCAGAAAAGCTAAATACGCTCTCTAAAATAGCTAAGGAGTTAAAATAGAGTATGTTAAAGAAGCTCTAA

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