SE3120070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10667
  • Fragaria vesca
  • SE3120070
  • Mutator
  • FrvM26
  • LG5:23664605-23664882
  • TATACTCNG
  • TTATATAAGGGTAAAATATTGTACAGTATTTGTGGTTTGAAGTCGACATCTGTTTAACTTTTTATGGTTTTATTTTAATCTGAATAGTCTTTAAAGTCACGATTTTTCATCCAAATAGTCTTTATGGTTTTATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCT           --TA    A    AC   A   G                 C      AC     A                                   C       C   C       CT  --AT  TT      TAA
                    TTATATAAGGG    AAAT TTGT  AGT TTT TGGTTTGAAGTCGACAT TGTTTA  TTTTT TGGTTTTATTTTAATCTGAATAGTCTTTAAAGTCA GATTTTT ATC AAATAGT  TT    GG  TTATTT   
                    |||||||||||    |||| ||||  ||| ||| ||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||  ||    ||  ||||||    
                    AATATGTTTCT    TTTA AACA  TCA AAA ATCAAACTTCAGCTGTA ACAAAT  AGAAA ACCAAAATAAAATTAGACTTATCAGAAATTTCAGT CTAAAAA TAG TTTATCA  AA    CC  GATAAG   
                               TAAC    -    AA   G   G                 A      -C     C                                   A       A   A       AT  GGCT  -T      TCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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