SE3130072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10669
  • Fragaria vesca
  • SE3130072
  • hAT
  • Frvh9
  • LG3:16310167-16310841
  • TATACTCN
  • CAGTGGCGTAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCGTTTTTGG            -------CAGA     C -  TA AAGGGTCAAAAAACAATAATACCACATAAATAAAAATATAATTTTATGAATAATATAAAAATTTATAAATCATTAGAATACTTCAAAAAAAAAAAAACAAATCTCAATCACAATAATTACAAGTAGAATCTTCTAAAGCATCCATAGTTGCAAGGTTTTTTTTGAAGGATGTCAACGACATGAAAAAAAATACTGAAGGACAACAAAAAGGAACACGCAAAAAAGCGATTAAAACTGCTTATAGAGGTACAGGAGAAATCAATCATAATAATTTATTGATTAGGAAAACATATTAATTT
                          CAGTGGCGTAGC           AACCA A AG  G                                                                                                                                                                                                                                                                                                           
                          ||||||||||||           ||||| | ||  |                                                                                                                                                                                                                                                                                                            
                          GTCACCGCATCG           CTCTC T CA  G                                                                                                                                                                                                                                                                                                           
                  GGTTTTTG            ATTCCCCCCTG     - T  -- TCGACTGCGGGGAGTCTAAAATCTAATCCAGTATAACAATAGACTAAACAGTCAAAAAAAATATCTATATACTACGACTGTGATTTAAACTGGGAAAATTTTAGATTGGTTATTCTCTTTCTCAAATTATTGTTTATAATTAATGTCGTTAATCATCACGATTTGAGGATAGTGTACACAAAAAGCTCTTTTTTTTTCGAGGATAGTCACACCCAGAGAAATAAAAAATGATTTGTAAGGCTTAGGATTAGTTAATTTTGTCTAAGAATCAAATTGTGAAATTGAAGAAAAAACAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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