SE3130074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10671
  • Fragaria vesca
  • SE3130074
  • hAT
  • Frvh10
  • LG5:7103774-7104502
  • TATACTCN
  • CAGTGGCGTAACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCGATTTCAAA          A   GAAACTACCATCA          -     AAACAAGAATATTAAAC AATCGAATAATCTAATTGAATAACATAAAAATGTATAAATTATACATAAATACTTAAAAAAGACAAAGTAACAAATCTCCCTAAAGTAATTATGATTAGCCACGATGATTCATATTTTGAAATCTTTTCGTGATGATTTCATTATCAACACCATCAAATATGTATTTTTTTTTTATATAATATCTCTCGAGAAAAGCTTTCATATTCTAAGTGATAAATTATGAAGGTTTTGACTAAAGAAATTACGGTAGAGAAATTTAGAGAGAATGATAAGAGACAAACAAATTGTAGAAGCTTGAATATATATAT
                           CAGTGGCGTA CCA             GAAGGGTCAA AGTAT                 G                                                                                                                                                                                                                                                                                                                     
                           |||||||||| |||             |||||||||| |||||                 |                                                                                                                                                                                                                                                                                                                      
                           GTCACCGCAT GGT             TACCCCGCTC CCCAA                 G                                                                                                                                                                                                                                                                                                                     
                   AAACTTTA          C   -----------GA          C     ----------------- TTAACTTGGGAGAGTGTAAAGTTCAACTCAAGAATCACCGACTCCTTTATATGACAGCTGGTTTTGAACGGAGAAAGACTGTGGGGAGTAGGTATGCATTTTTTTGAAGATAGGGGTACAAAAAATTAGAAAATTTATATATAGAACAGAACTCTGCAATTTTTTTCGAAAATAGGAATATAATAAAATAAAAACATTTTATATAACGGTTAATTATATCATCTGTTCAAAAGAACGACAGGATTAAACCATATCTAAACGATTAGTGTGTTACATGTTAGGATTAGTTAAGTACTATATAAATGCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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