SE3160075

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10672
  • Fragaria vesca
  • SE3160075
  • Mim
  • FrvMi6
  • LG6:10889346-10889786
  • TATACATACATA
  • TATACATACATACAGCCCCCTTCCATTGAGGGATCCCTATTTTTGACCACTTTCTAGGGATAGGGCATTACACCACTTCCCAATTGAATTTTTACATCTCCACCGTTCATATCTTAGGTCTATATGAGTAGATCACCTCTACAAAATTTCATATGATTTGGTGATCGTTAAGACTTTCAAAAGTTTGATTTAGTTTTAATGATTTTGAACGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
    C   CA     CC        T                 TGA   C   C                     -      A    AAT                                                    C                              A                                 G       CAGCTTATG
TATA ATA  TACAG  CCCTTCCA TGAGGGATCCCTATTTT   CCA TTT TAGGGATAGGGCATTACACCA CTTCCC ATTG   TTTTACATCTCCACCGTTCATATCTTAGGTCTATATGAGTAGATCACCTCTA AAAATTTCATATGATTTGGTGATCGTTAAG CTTTCAAAAGTTTGATTTAGTTTTAATGATTTT AACGGTT         
|||| |||  |||||  |||||||| |||||||||||||||||   ||| ||| ||||||||||||||||||||| |||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||          
ATAT TAT  ATGTC  GGGAAGGT ACTCCCTAGGGATAAAA   GGT AAA ATCCCTATCCCGTAATGTGGT GAAGGG TAAT   AAAATGTAGAGGTGGCAAGTATAGAATCCAGATATACTCATCTAGTGGAGAT TTTTAAAGTATACTAAACCACTAGCAATTC GAAAGTTTTCAAGTTAAATCAAAATTACTGGAA TTGCCAA         
    A   AC     CC        T                 TTC   -   T                     T      C    ATT                                                    A                              C                                 G       AATCAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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