SE3120077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10674
  • Fragaria vesca
  • SE3120077
  • Mutator
  • FrvM12
  • LG1:17961310-17961734
  • TATACTCNG
  • GGGTAAGGTTCGAGTGTATTAATGCATGTGATACATCAACTTTATC

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNCCAAATAGAA   T      --CG     A              A          A  CTCAAA        AGT                       C   A                                -AAAT         C       C                      -TTCA  C  C     T    CAACTTTTTTTCAAT
                           GGG AAGGTT    AGTGT TTAATGCATGTGAT CATCAACTTT TC      TTGTAAAA   GTTCTCAAAGTAGTAATATTAGT TTC AAGTTGTAATATGAGTCTTTAAAGTTGTAAAA     TAGTTATAA ATTAGTC TCATGTGTCCTTAAAGTGGTAA     GT CT AAAGT GTAA               
                           ||| ||||||    ||||| |||||||||||||| |||||||||| ||      ||||||||   ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||     ||||||||| ||||||| ||||||||||||||||||||||     || || ||||| ||||               C
                           CCC TTTTAA    TTATA AATTACGTATACTA GTAGTTGAAA AG      AACATTTT   CAGGAGTTTCATTATTATAATCA GAG TTCAACATTATACTCAGAAATTTCAACATTTT     ATCAATGTT TAATTAG AGTACATAGGAATTTCACCATT     CA GA TTTCA CGTT               
                   AAGATAAA   -      AATG     C              C          C  AATTTC        ATT                       A   C                                AAAAT         A       T                      TTATA  C  A     C    AACTCAATAATTTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End