SE3150079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10676
  • Fragaria vesca
  • SE3150079
  • PIF/harbinger
  • FrvP6
  • LG3:541642-542067
  • TAT
  • AGAGCATCTCCAACAGCTTCCCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTT         C         C    AAATTTA     --           AAAA   AAAATCTCTAAAAAAAATTATGATCAAAATCCAGCAGCTTCTCCATTTTAGAGATTTCAGCATTTAATACAACAATAAAATATAATATATCATCATTAATTATAACAAAAAAAACATTATATATTTCATTGTAACAATAAACTACCCAATAAAATATT
                    AGAGCATCT CAACAGCTT CCCA       TCTAA  AATGGGGAAGC    GCT                                                                                                                                                              
                    ||||||||| ||||||||| ||||       |||||  |||||||||||    |||                                                                                                                                                               
                    TCTCGTAGA GTTGTCGAA GGGT       ACTTT  GAGTTAAAACC    CTT                                                                                                                                                              
                  AT         A         A    -AAAAGA     AA           ----   TATATCTCGATAAAAATCCAGGTTGTCGAAGGGGTAAGATAAGGGGTTTTACCCCTACTTCTTCTTTTTATTCAGAAGTAAGGGGTTTAAACGTCGTTTCAGAAAGAAGGGGTTTTAATTTAAAAAGTGCACGAGGTTGCTTAAATTCTGTTGTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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