Plant MITE

SE3120082

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10679
Fragaria vesca
SE3120082
Mutator
FrvM22
LG7:17612327-17612526
TATACTCNG
CCATATTTGGCGGAATCAAATTTGCTCCCCACCCTTTCATCCCCACCCTCCTCCCCACCCTTTTAGATGAATGCCAAGTGTCCATTT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNN   T  T   C   AT                  T          C   C                                 A   TCACCAT        A
                  CCA AT TGG GGA  CAAATTTGCTCCCCACCC TTCATCCCCA CCT CTCCCCACCCTTTTAGATGAATGCCAAGTGTCC TTT       TTTAATTA 
                  ||| || ||| |||  |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||       |||||||| A
                  GGT TA ACC CTT  GTTTAAACGAGGGGTGGG AAGTAGGGGT GGA GAGGGGTGGGAAAATCTACTTACGGTTCACAGG GAA       AAATTAAT 
                 C   T  T   -   -C                  T          A   A                                 -   ----TAC        G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120082

TATACTCNGTCATNCTNNCCATATTTGGCGGAATCAAATTTGCTCCCCACCCTTTCATCCCCACCCTCCTCCCCACCCTTTTAGATGAATGCCAAGTGTCCATTTTCACCATTTTAATTAAAGTAATTAAACATAAGGGACACTTGGCATTCATCTAAAAGGGTGGGGAGAAGGATGGGGATGAATGGGTGGGGAGCAAATTTGCTTCCCATATTTGGC

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