SE3120087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10684
  • Fragaria vesca
  • SE3120087
  • Mutator
  • FrvM5
  • LG3:25714875-25715242
  • TATACTCNG
  • TGGAGAAATTTTTCAGTGCTACGGGAAGACCACGTGGCAGTCTGATGTGGTCCTACGTTCCAATTAAATTTAGATATGTGAATTTTTTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTATAAAC             C            A  C  C    C              C       C                           T  TGAAAAATTAT         -----   GTCAAAGATTATTTTGGGTTTTATGTTGTTTTTTAAACCTTAAACCCTAAACCCTTAAACCCTAA
                          TGGAGAAATTTTT AGTGCTACGGGA GA CA GTGG AGTCTGATGTGGTC TACGTTC AATTAAATTTAGATATGTGAATTTTTT CA           TTCAGCTAT     TTT                                                                 
                          ||||||||||||| |||||||||||| || || |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||           |||||||||     |||                                                                 A
                          ATCTCTTTAAAAA TCACGATGCCCT CT GT CACC TCAGACTGCACCAG ATGTAAG TTAGTTTAAATCTGTACACTTAAAAAA GT           TGATTTTAT     ACT                                                                 
                   GTCAAAT             T            C  A  A    A              A       A                           T  -----------         AATTG   ATAAAAGATAAAAAACACTTTACTGTAAGTACCCATAAAATCGTTCAAGTTGAACCCCAGATCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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