SE3120088

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10685
  • Fragaria vesca
  • SE3120088
  • Mutator
  • FrvM2
  • LG3:20708432-20708671
  • TATACTCNG
  • GCTAGGGAAATTATTATTTGTACCCGGAACACCATCTGTTTTATGTTTCCCTTTAATCTTATTGGTCCACGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTGTTT  ---     A       A                   ------     TTA    --T   -T      T   T G  ---CA     TTTAT  TTATTTCTGATT    TATTTAATTACTTT
                        GC   TAGGG AATTATT TTTGTACCCGGAACACCAT      CTGTT   TGTT   CCC  TTAATC TAT G TC     CGTGT     CC            GGTG              
                        ||   ||||| ||||||| |||||||||||||||||||      |||||   ||||   |||  |||||| ||| | ||     |||||     ||            ||||              T
                        CG   GTCTC TTAATAA AGACATGGGCCTTGTGGTA      GACAG   ACAA   GGG  GGTTAG ATA T AG     GTACA     GG            CCAC              
                      AT  TTT     A       G                   CACCGT     TCC    CAT   CC      T   T G  TCTAA     CCCCT  -----TCGTTCC    CTTTTTTCTTTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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