SE3130089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10686
  • Fragaria vesca
  • SE3130089
  • hAT
  • Frvh12
  • LG4:25630140-25630918
  • TATACTCN
  • CC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNN  TTTGT               -    CCCTTCGACCCTAGCCCTACCCTATTAGGCCGAAGCCCTACCCGGCCCTCCGTTAGGGCGGGCCGGCCCTAGCCTTTTTTAATTAGGGTAGGGCAAGGGTCAAGCAAATGAAACCCGGCTTTACCCTACGGCCCTACCCTAATGAGTCCTTTAGGGTTAAGCCCGCTCCGGCCCTAAAAGCCCGTCTTTTAGGCCCTATTAATTTTTTAATTTTCTATTGTTTTTAATATGTTTTTTATTTTTTATACAATACAACTAATCTTATTTTTTATAATTTATTTTGTAAGCTTTATTTCTTTAGTTTTTATTTTGCTTTGTTAAATAACAATTGATTTTTGATGATTTAGAGAGATAGTTAATTAG
                  CC     GGTAGGCCTCATCAT TTGA                                                                                                                                                                                                                                                                                                                                                                           
                  ||     ||||||||||||||| ||||                                                                                                                                                                                                                                                                                                                                                                           A
                  GG     TCATCCGGAGTGGTA CCGG                                                                                                                                                                                                                                                                                                                                                                           
                    -TGTT               C    CCTGATCCCGGTCGGGATGAGATTTAAAATTCCGAATCCCATTCTAGCCCATCCCGAAACTGAACCAGTTGTTTTAAATCCCGATCCGGCCCCGAATTTATACGTTCGGAACCGGCGGAAATTTCGGGTAAAGCAATTCCGATTATCCCGGCCCATCCCGACCAGAAAATCCCAATTAATTTATCCCAGTTTACCCGGCTTATACTGCAATAAAACATGTATTATTTAAATAATCAAAAAAAAAAGGAGTTTTTAATGGAGTTCCCTTTGTTTTGGGATAAAAATCAGTACAAATTGTATCTATATGTACTATAAATTGAATTCTATAGATCTTAATAATTAGATTCATCAATATAAGTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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