Plant MITE

SE3150090

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10687
Fragaria vesca
SE3150090
PIF/harbinger
FrvP12
LG6:599868-600193
TAT
AGGCCTAGTTTGGTACAGCTTCGCTTTTAAAAAAATCAGCTTCT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCTA   C           CA   -TC     TAA      CA   T  ATCC    - TT  GATTTTATAGTGTTTGGTAAATGAAAAAAAAACAGCTTTTTTTGAAAATTACAAGTCACTGGCAGCAGCTTTTAGAAGCAACCTGAAGGTTACTTCTGAAAGCAGC
                    AGG CTAGTTTGGTA  GCT   GCTTT   AAAAAT  GCT CT    GAAT T  TA                                                                                                          
                    ||| |||||||||||  |||   |||||   ||||||  ||| ||    |||| |  ||                                                                                                           
                    TCC GATCAAACCAT  CGA   TGAAA   TTTTTG  CGA GA    CGAC T  GA                                                                                                          
                  AA   C           AA   CAC     TTG      -A   C  ----    A --  CGCTTTTATTAGTCGACACTTAATTTTGTCAAAACACAAACCATTTATAATCAAAATTTTCACGACGGTTCTATTTTAAATAATTTTAGATCACAAAAATCACTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150090

TATACTCNGTCATNCTNCTAAGGCCTAGTTTGGTACAGCTTCGCTTTTAAAAAAATCAGCTTCTATCCGAATTTTTAGATTTTATAGTGTTTGGTAAATGAAAAAAAAACAGCTTTTTTTGAAAATTACAAGTCACTGGCAGCAGCTTTTAGAAGCAACCTGAAGGTTACTTCTGAAAGCAGCTGTCACTAAAAACACTAGATTTTAATAAATTTTATCTTGGCAGCACTTTTAAAACTAATATTTACCAAACACAAAACTGTTTTAATTCACAGCTGATTATTTTCGCAGTACAGCAGCAGCAGTTTTTGTTAAAGTCACAGCAATACCAAACTAGCCCTAA

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