SE3120091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10688
  • Fragaria vesca
  • SE3120091
  • Mutator
  • FrvM19
  • LG1:18424524-18424963
  • TATTCTTAT
  • GGGAGGGGTTCTAATGAGCACCACTAAGTGACTAGTTGAAGACTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATTCTTATTGT     G            C          ----  C       A     TCTCATTAA      ATTTA    C       A   A   T   T        A     C    AT     C      --         C            T  G       AGT          --   -   AA TAAATCAAATCAATGGACGATCCAAATCTGTCAAA
            GGGAG GGTTCTAATGAG ACCACTAAGT    GA TAGTTGA GACTT         TCGTTT     CACC ATTTTTC GTT CAT TTT CATCTCAA TCGTT AGTT  TAGGT TATATA  AGTAGATAA TTCTACAAATTT CA TCAAATT   GATCGTTAAG  GGA TCG  C                                   
            ||||| |||||||||||| ||||||||||    || ||||||| |||||         ||||||     |||| ||||||| ||| ||| ||| |||||||| ||||| ||||  ||||| ||||||  ||||||||| |||||||||||| || |||||||   ||||||||||  ||| |||  |                                   C
            CTCTC CCAAGATTACTC TGGTGATTTA    CT ATTAACT CTGAA         AGCAAA     GTGG TAAAAAG TAA GTA AAG GTAGAGTT GGCAA TCAA  ATCTA ATATAT  TCATCTATT GAGATGTTTAAA GT GGTTTAA   TTAGCAATTC  TAA TAT  T                                   
  TGTTATTCTT     A            C          ACTC  A       A     -------TA      -----    A       C   C   T   T        -     A    AT     T      AC         A            -  A       CTT          CG   G   -- TATACTAAATGGTTAATATTTGAACTTATCGAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End