Plant MITE

SE3120098

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10695
Fragaria vesca
SE3120098
Mutator
FrvM26
LG4:25474403-25474735
TATTTAATT
TTAATTAAGGGTAAAATATTGTATAGTCCTTGTGGTTTAAAGTCGACATCTGTTTAGTTCTTAAGGTTTTATTTTAATCTGAATAGTCCTTAAAGTCACGATTTTTCATCCAAATAGTCCTTATG

Secondary structure and sequence

TSD TIR

5'

3'

TAT           -TAA  TA    A     C         A          C     A      AA                                              C              --------AC   TAACTGAGAAAATTGTCGGAATGACTATTTG
   TTAATTAAGGG    AA  TTGT TAGTC TTGTGGTTT AAGTCGACAT TGTTT GTTCTT  GGTTTTATTTTAATCTGAATAGTCCTTAAAGTCACGATTTTTCATC AAATAGTCCTTATG          CTT                               
   |||||||||||    ||  |||| ||||| ||||||||| |||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          |||                               G
   AATTAATTTCT    TT  AACA ATCAG AATACCAAA TTCAGCTGTA ACAAA CAGGAA  CCAAAATAAAATTAGACTTATCAGGAATTTCAGTGTTAAAAAGTAG TTTATCAGGAATAC          TTA                               
              TAAC  TG    A     A         C          T     C      CA                                              T              CAAAATAAAA   GACTTATCAGGAATTTCAGTACTAAAAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120098

TATTTAATTAAGGGTAAAATATTGTATAGTCCTTGTGGTTTAAAGTCGACATCTGTTTAGTTCTTAAGGTTTTATTTTAATCTGAATAGTCCTTAAAGTCACGATTTTTCATCCAAATAGTCCTTATGACCTTTAACTGAGAAAATTGTCGGAATGACTATTTGGATGAAAAATCATGACTTTAAGGACTATTCAGATTAAAATAAAACCATAAGGACTATTTTGATGAAAAATTGTGACTTTAAGGACTATTCAGATTAAAATAAAACCACAAGGACCAAACATATGTCGACTTCAAACCATAAAGACTAAACAAGTTTCAATTCTTTAATTAA

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