SE3130100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10697
  • Fragaria vesca
  • SE3130100
  • hAT
  • Frvh4
  • LG6:13118919-13119626
  • TAATTTTT
  • TTAGGGGTGGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTTTT              -AAAATCCCG        AACCC   CCGGTCCCATCCCGAAATTTGCCGGGATGGGACGGGATTTAAATCTCAAAACGTTAGGCCCGTCCCGTCCCGTCCCATCCCTATACAACGGGACGGGACATGGGACGGATAATTCAAATCCCGTTTAGGCCCGTCCCGTCCCGACTAGTTTAATAATTGATTTTTTTATTAATTAATATGTGATTTGAAGCTTTCATTTATGTGTTTTGATCTTACCTCTTTGTTTCTTTAAGTTAATAGATTGTCTCATTCAATAATAGTGATGTTTAATACTTCAATTTGTTGATTGTTGTAGACTCTCTTCTTGC
         TTAGGGGTGGGCAT          TAATCCCG     GTC                                                                                                                                                                                                                                                                                                                    
         ||||||||||||||          ||||||||     |||                                                                                                                                                                                                                                                                                                                    A
         AATCCCCACCCGTA          CCCTGTCC     CTC                                                                                                                                                                                                                                                                                                                    
  TTTTTTT              CCCTGCCCTA        --TAT   GATTAGAGTGCCGGACAGGGCCTATAACTTTAGCCCTGCCCTACCCTACCCTAAATGCAAAAATTCTAAAGTAGGGTGGGCCCGGGATAGGGCCAACCCTGCCCTGCTCTACCCTGCCCTGCCCGGATTAGGGTCTATTTTTTTTCAATTTTATTTGAACATTCATTTTCTTTCTCAAAGTATCAAAATATCACAACAAATGAGATAATTCATAATTGTTCATAAACATTGTATAAATGTTCATGTTGTGCTATATTATTCTCTTAAATATAACGAATGAAAGAGATTTGTACAGTAGTGATGATGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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