SE3150101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10698
  • Fragaria vesca
  • SE3150101
  • PIF/harbinger
  • FrvP4
  • LG5:13404020-13404501
  • TAT
  • AGGCCTCGTTTGGTTGTTAGAAAGGAAATTGGTTCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTT               --------------   -A         TTG       --AGT   TCCTATGTACATAGGAAAGTAAATTTCCTATTAGTTTCCATACCAAGTGTTTGGGAACGTCAGGAAAGTAACTAGGAAATGTATTTTATTTTCCTTTCCAATGTTTGGTTTATGCATGGATAGGAAAACAAGTAATATTAATTTACCAATTATATATCCTTAGTATTAAAATATAAAATATTCAAG
                     AGGCCTCGTTTGGTT              GTT  GAAAGGAAA   GTTCCTT     CTT                                                                                                                                                                                          
                     |||||||||||||||              |||  |||||||||   |||||||     |||                                                                                                                                                                                          A
                     TCCGGAGCAAACCAA              CAA  CTTTCCTTT   CAAGGAA     ACA                                                                                                                                                                                          
                   AT               GTTCCTAACCTTTC   CC         TAA       AGTAA   AACCGTGTGGATTCTTTTATTTTCTGAAATGATATTATATCTTTTTATCTACCCTTTAACCTAGGAGGGTGTATGGTACCCTAAGTTAGAGGGAGTATGAAAGGGTTGTAATTAACATGTAATTAACGTAGAAAGTTTATAATATAATTACTTACAATAATGGTTTAATGGGTGTTTTATAAACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3