Plant MITE

SE3120103

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10700
Fragaria vesca
SE3120103
Mutator
FrvM22
LG3:7408189-7408386
TATACTCNG
GGAAGCAAATTTGCTCCCCACCCTTTCATCCCCACCCTCCTCCCCACCCTTTTAGATGAATGCCAAGTGTCTATTT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCAACACTAAC                       T              CC                                A   TCACCAT        A
                           GGAAGCAAATTTGCTCCCCACCC TTCATCCCCACCCT  TCCCCACCCTTTTAGATGAATGCCAAGTGTCT TTT       TTTAGTTA 
                           ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||       |||||||| A
                           CCTTCGTTTAAACGAGGGGTGGG AAGTAGGGGTGGGA  AGGGGTGGGAAAATCTACTTACGGTTCACAGG AAA       AAATTAAT 
                  CAATCACAA                       T              AA                                -   ----TAC        G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120103

TATACTCNGTCATNCTNCAACACTAACGGAAGCAAATTTGCTCCCCACCCTTTCATCCCCACCCTCCTCCCCACCCTTTTAGATGAATGCCAAGTGTCTATTTTCACCATTTTAGTTAAAGTAATTAAACATAAAGGACACTTGGCATTCATCTAAAAGGGTGGGGAAAAGGGTGGGGATGAATGGGTGGGGAGCAAATTTGCTTCCAACACTAAC

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