Plant MITE

SE3140112

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10709
Fragaria vesca
SE3140112
CACTA
FrvC4
LG5:4279013-4279211
TAT
TCACAACAAGAATATAGAGCAAAGGCCACACAAAGAGTGTGACCTTTAAAGATGTTG

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCAA                               ---------AAA       A      A  A     -CAATCCATACT      A   TTTTTTCCTCATCT
                    TCACAACAAGAATATAGAGCAAAGGCCACAC            GAGTGTG CCTTTA AG TGTTG            TGTGTG CAA              
                    |||||||||||||||||||||||||||||||            ||||||| |||||| || |||||            |||||| |||              C
                    AGTGTTGTTCTTATATCTCGTTTCCGGTGTG            TTCACAC GGAAAT TC ACAAC            ACACAC GTT              
                  TA                               AAGAACACACCG       C      C  C     ATAATAAACAAT      C   CACACTCATAATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3140112

TATACTCNGTCATNCTNCAATCACAACAAGAATATAGAGCAAAGGCCACACAAAGAGTGTGACCTTTAAAGATGTTGCAATCCATACTTGTGTGACAATTTTTTCCTCATCTCACTAATACTCACACTTGCCACACATAACAAATAATACAACACCTCTAAAGGCCACACTTGCCACACAAGAAGTGTGGCCTTTGCTCTATATTCTTGTTGTGAAT

Copy Cancel