SE3130113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10710
  • Fragaria vesca
  • SE3130113
  • hAT
  • Frvh15
  • LG3:21568146-21568800
  • TATCAGAA
  • ATAGGGCTGGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATCAGAAA              CTTC    CGGGTCGGTTTTAGGACGAAACCAAAACCAATCTGAATTATTCCGTTTAATGTTTTTTCCAATCAAATTTGGATTTTAAACCTTTGACCCGAATATTAGGCCCATCAGAATTTTTGGATCGGTTCGGGTCGGTTTCAGTTTTGGTCCATATTTGAAAAACTTTTTGCCCATCTACTATCTTACTGTAAAATTGAACTTCAAGTTTTTAACTTGAGTAATATGTTTTTTTTATAAGGAAAAATATAAACTCAAAATACAACAAGCAATCCAATGCACTCCCAATCTTTTCTAGATTAA
         ATAGGGCTGGGCAT    GGTT                                                                                                                                                                                                                                                                                                         
         ||||||||||||||    ||||                                                                                                                                                                                                                                                                                                         T
         TATCCCGACCCGTA    GGCT                                                                                                                                                                                                                                                                                                         
  AAAAGAC              AATT    TACACACGTTTTTAGCTGGCTTGGCTTGGCTTTTGGCCTAGTCTATTGGCTTGGTTTGGTAAACCCAGTTTTGTTCATCACTTGGCTTGACTTGGCCAAATCTAGCCTAACCTAGACCAAGTTCGAGAATTTGTTTGGCTTTTATTGTCTTGGCTAGGCTTAATATACTACACATTTATATATATTAAATATATGGACTTTACAATTATAATAATCAACTAAAGTAGAGATGAATGTCACATGAAAGAATGTAAATTTTTCTGTTAAAGAGTAAGTTGAGTAAAGAATTTTTTTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3