SE3130114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10711
  • Fragaria vesca
  • SE3130114
  • hAT
  • Frvh16
  • LG2:835275-835438
  • TATACTCN
  • CATAGGCGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCCCCAAGTC           TC     CTAGA   --    GGTGCCATCATTAACAAATTTCTTCAATTCAGCTAGAATTCAAAGG
                          CATAGGCGGAG  AGAAA     AAT  GAGG                                              
                          |||||||||||  |||||     |||  ||||                                               
                          GTATCCGCCTC  ATGTA     TAT  AGTT                                              
                  CTGAACCC           -C     -----   CT    TCCCACAGTACCGTGGGGAGTTTTAAAACCGAAATGTACATAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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